Total Genomics Solution · Genome Assembly Services
Chromosome-Level Assemblies for Crop Science & National Research
From plantation crops and staple cereals to medicinal plants — we deliver platinum-standard, haplotype-resolved reference genomes purpose-built for breeding programmes, germplasm conservation, and government mandated biodiversity initiatives across Asia-Pacific.
The Strategic Case
Why Your Programme Needs a
Chromosome-Level Reference Genome
From Markers to Mechanisms
Fragmented draft assemblies restrict your genomic selection models to low-density marker panels, obscure structural variants driving economically important traits, and prevent accurate pan-genome construction across accessions.
A haplotype-resolved, chromosome-scale reference unlocks the full spectrum of modern crop genomics — from GWAS with physical-position resolution to map-based cloning of disease-resistance loci, and regulatory compliance for biosafety dossiers submitted to national authorities.
For government research mandates — biodiversity inventories, indigenous crop preservation, GI product authentication — a platinum-standard assembly is both a scientific deliverable and an institutional asset with long-term policy value.
Our Technology Pipeline
Four-Stage Platinum Assembly Workflow
An integrated, end-to-end pipeline combining the highest-fidelity sequencing platforms with expert bioinformatics — from DNA extraction advisory through to annotated, publication-ready genome packages.
Proven Crop Expertise
Reference Assemblies Across Asia-Pacific's Priority Crops
Our team carries validated experience across the full spectrum of Asian strategic crops — from plantation commodities to subsistence cereals and high-value medicinal species.
Haplotype-resolved chromosome-level assemblies successfully delivered for this heterozygous, repeat-rich (84% TE content) diploid genome — a flagship demonstration of our Hi-C scaffolding capability for plantation crop species.
SMRT-sequenced assemblies for cultivated and wild Oryza species, enabling population-level pan-genome initiatives and introgression mapping for stress tolerance QTL. Published in Communications Biology.
Landmark allotetraploid assemblies (Nature Genetics, IF 41.4) resolving the A and D subgenomes of tetraploid cotton — a technically demanding polyploid assembly demonstrating sub-genome phasing capability.
High-value medicinal plant assemblies supporting biosynthetic pathway elucidation, GI product authentication, and intellectual property protection for herbal commodity exporters and pharmaceutical R&D.
Experienced in C4/C3 grass assemblies including polyploid sorghum and complex sugarcane genomes. Low-pass WGS population genotyping pipelines available as a cost-efficient complement to reference assembly projects.
We specialise in first-of-species reference assemblies for ASEAN horticultural and orphan crops where no prior reference exists — providing the molecular foundation for breeding programme initiation and export market value-adding.
Project Deliverables
What Your Institution Receives
Publication-Ready. Submission-Ready. Programme-Ready.
Every genome assembly project is delivered as a comprehensive data package designed to satisfy journal peer review, NCBI/EBI database submission requirements, and internal breeding programme integration — without further processing.
Government institutions and research agencies receive a complete technical report structured to support project reporting, grant deliverables, and institutional data governance requirements.
Scientific Track Record
Published in the World's
Highest-Impact Journals
Landmark comparative genomics study of Gossypium barbadense and G. hirsutum resolving the A and D subgenomes of allotetraploid cotton — one of the most economically significant polyploid assemblies published to date.
First reference-quality assembly for this high-value medicinal herb, elucidating the ginsenoside biosynthesis pathway and providing the molecular foundation for quality authentication and breeding of this protected traditional medicine species.
SMRT-sequenced de novo assembly of the primary wild progenitor of Asian cultivated rice, revealing the genomic architecture of key adaptation loci and providing a critical resource for rice improvement and germplasm utilisation programmes.
The Gold Standard in Hi-C —
Now Available in Asia-Pacific
Phase Genomics is the global leader in proximity ligation Hi-C technology and the inventor of the Proximo™ genome scaffolding platform — used in more chromosome-scale assembly publications than any competing technology.
Through our strategic partnership, Total Genomics Solution delivers Phase Genomics Hi-C capability directly to crop research institutions and government agencies across Southeast and East Asia — without the logistics, lead-time, or cost overhead of offshore sample shipment.
Start Your Project
Ready to Establish the Reference Genome
for Your Crop?
Whether you are initiating a national genome programme, supporting a breeding institute's molecular platform, or building the reference resource for a published genomics study — our team is ready to scope your project and provide a detailed technical proposal.
Proposals typically delivered within 5 business days · NDA available on request